K8s Deployment

This page contains additional information on setting up StudyGovernor when using Kubernetes. For the initial deployment see section ‘Deployment using kubernetes’ on the page ‘How To’s’.

Configuring StudyGovernor deployment

Copy the values from values.yaml. Important keys to change are on the top of the values file:

Title

Key	Type	Description
ingress	Dictionary	Configure ingress
hostname	String	Configure hostname
hostpath	String starting with ‘/’	Hostname of the service
admin-password	String	Password for admin user

Adding Study specific data

In the values file under studygovernor –> project add the key studySecrets. Here we can add multiple secrets by creating a list. Each item in the list should have a name and a path (directory) where the file should end up.

studySecrets:
  - name: included-patients
    path: /project/study-data
  - name: scan-dates
    path: /project/study-data

The name references an existing secret and should either be created manually, through your specific deployment method or for example kubeseal. After the deployment the data should be available for the workers in the directory specified. The filename is specified by the secret itself. The secret should look something like this:

apiVersion: v1
kind: Secret
metadata:
  name: study-csv
data:
  included-patients.csv: MDAxOzAxLTAxLTIwMDQK